Diastereomeric Recognition of 5’,8-cyclo-2’-Deoxyadenosine Lesions by Human Poly(ADP-ribose) Polymerase 1 in a Biomimetic Model
Identifieur interne : 000617 ( Main/Exploration ); précédent : 000616; suivant : 000618Diastereomeric Recognition of 5’,8-cyclo-2’-Deoxyadenosine Lesions by Human Poly(ADP-ribose) Polymerase 1 in a Biomimetic Model
Auteurs : Annalisa Masi ; Arianna Sabbia ; Carla Ferreri ; Francesco Manoli ; Yanhao Lai ; Eduardo Laverde ; Yuan Liu [États-Unis] ; Marios G. Krokidis ; Chryssostomos Chatgilialoglu ; Maria Rosaria Faraone MennellaSource :
- Cells [ 2073-4409 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Deoxyadenosines.
- chemical , metabolism : Oligonucleotides, Poly (ADP-Ribose) Polymerase-1.
- Biomimetics, DNA Damage, Fluorescence, Humans, Models, Biological, Molecular Weight, Protein Binding, Stereoisomerism, Substrate Specificity, Temperature.
Abstract
5’,8-Cyclo-2’-deoxyadenosine (cdA), in the 5’
Url:
DOI: 10.3390/cells8020116
PubMed: 30717407
PubMed Central: 6406461
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Diastereomeric Recognition of 5’,8-cyclo-2’-Deoxyadenosine Lesions by Human Poly(ADP-ribose) Polymerase 1 in a Biomimetic Model</title><author><name sortKey="Masi, Annalisa" sort="Masi, Annalisa" uniqKey="Masi A" first="Annalisa" last="Masi">Annalisa Masi</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Sabbia, Arianna" sort="Sabbia, Arianna" uniqKey="Sabbia A" first="Arianna" last="Sabbia">Arianna Sabbia</name><affiliation><nlm:aff id="af2-cells-08-00116">Dipartimento di Biologia, Università di Napoli “Federico II”, 80138 Napoli, Italy;<email>ar.sabbia@studenti.unina.it</email></nlm:aff></affiliation></author><author><name sortKey="Ferreri, Carla" sort="Ferreri, Carla" uniqKey="Ferreri C" first="Carla" last="Ferreri">Carla Ferreri</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Manoli, Francesco" sort="Manoli, Francesco" uniqKey="Manoli F" first="Francesco" last="Manoli">Francesco Manoli</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Lai, Yanhao" sort="Lai, Yanhao" uniqKey="Lai Y" first="Yanhao" last="Lai">Yanhao Lai</name><affiliation><nlm:aff id="af3-cells-08-00116">Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA;<email>yalai@fiu.edu</email> (Y.L.);<email>yualiu@fiu.edu</email> (Y.L.)</nlm:aff></affiliation></author><author><name sortKey="Laverde, Eduardo" sort="Laverde, Eduardo" uniqKey="Laverde E" first="Eduardo" last="Laverde">Eduardo Laverde</name><affiliation><nlm:aff id="af4-cells-08-00116">Biochemistry Ph.D. Program, Florida International University, Miami, FL 33199, USA;<email>elave006@fiu.edu</email></nlm:aff></affiliation></author><author><name sortKey="Liu, Yuan" sort="Liu, Yuan" uniqKey="Liu Y" first="Yuan" last="Liu">Yuan Liu</name><affiliation><nlm:aff id="af3-cells-08-00116">Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA;<email>yalai@fiu.edu</email> (Y.L.);<email>yualiu@fiu.edu</email> (Y.L.)</nlm:aff></affiliation><affiliation><nlm:aff id="af4-cells-08-00116">Biochemistry Ph.D. Program, Florida International University, Miami, FL 33199, USA;<email>elave006@fiu.edu</email></nlm:aff></affiliation><affiliation wicri:level="2"><nlm:aff id="af5-cells-08-00116">Biomolecular Sciences Institute, Florida International University, Miami, FL 33199, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biomolecular Sciences Institute, Florida International University, Miami, FL 33199</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Krokidis, Marios G" sort="Krokidis, Marios G" uniqKey="Krokidis M" first="Marios G." last="Krokidis">Marios G. Krokidis</name><affiliation><nlm:aff id="af6-cells-08-00116">Institute of Nanoscience and Nanotechnology, NCSR Demokritos Agia Paraskevi, 15310 Athens, Greece;<email>m.krokidis@inn.demokritos.gr</email></nlm:aff></affiliation></author><author><name sortKey="Chatgilialoglu, Chryssostomos" sort="Chatgilialoglu, Chryssostomos" uniqKey="Chatgilialoglu C" first="Chryssostomos" last="Chatgilialoglu">Chryssostomos Chatgilialoglu</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Faraone Mennella, Maria Rosaria" sort="Faraone Mennella, Maria Rosaria" uniqKey="Faraone Mennella M" first="Maria Rosaria" last="Faraone Mennella">Maria Rosaria Faraone Mennella</name><affiliation><nlm:aff id="af2-cells-08-00116">Dipartimento di Biologia, Università di Napoli “Federico II”, 80138 Napoli, Italy;<email>ar.sabbia@studenti.unina.it</email></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">30717407</idno><idno type="pmc">6406461</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6406461</idno><idno type="RBID">PMC:6406461</idno><idno type="doi">10.3390/cells8020116</idno><date when="2019">2019</date><idno type="wicri:Area/Pmc/Corpus">000B60</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000B60</idno><idno type="wicri:Area/Pmc/Curation">000B60</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000B60</idno><idno type="wicri:Area/Pmc/Checkpoint">000340</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000340</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:30717407</idno><idno type="wicri:Area/PubMed/Corpus">000651</idno><idno 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first="Annalisa" last="Masi">Annalisa Masi</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Sabbia, Arianna" sort="Sabbia, Arianna" uniqKey="Sabbia A" first="Arianna" last="Sabbia">Arianna Sabbia</name><affiliation><nlm:aff id="af2-cells-08-00116">Dipartimento di Biologia, Università di Napoli “Federico II”, 80138 Napoli, Italy;<email>ar.sabbia@studenti.unina.it</email></nlm:aff></affiliation></author><author><name sortKey="Ferreri, Carla" sort="Ferreri, Carla" uniqKey="Ferreri C" first="Carla" last="Ferreri">Carla Ferreri</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Manoli, Francesco" sort="Manoli, Francesco" uniqKey="Manoli F" first="Francesco" last="Manoli">Francesco Manoli</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Lai, Yanhao" sort="Lai, Yanhao" uniqKey="Lai Y" first="Yanhao" last="Lai">Yanhao Lai</name><affiliation><nlm:aff id="af3-cells-08-00116">Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA;<email>yalai@fiu.edu</email> (Y.L.);<email>yualiu@fiu.edu</email> (Y.L.)</nlm:aff></affiliation></author><author><name sortKey="Laverde, Eduardo" sort="Laverde, Eduardo" uniqKey="Laverde E" first="Eduardo" last="Laverde">Eduardo Laverde</name><affiliation><nlm:aff id="af4-cells-08-00116">Biochemistry Ph.D. Program, Florida International University, Miami, FL 33199, USA;<email>elave006@fiu.edu</email></nlm:aff></affiliation></author><author><name sortKey="Liu, Yuan" sort="Liu, Yuan" uniqKey="Liu Y" first="Yuan" last="Liu">Yuan Liu</name><affiliation><nlm:aff id="af3-cells-08-00116">Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA;<email>yalai@fiu.edu</email> (Y.L.);<email>yualiu@fiu.edu</email> (Y.L.)</nlm:aff></affiliation><affiliation><nlm:aff id="af4-cells-08-00116">Biochemistry Ph.D. Program, Florida International University, Miami, FL 33199, USA;<email>elave006@fiu.edu</email></nlm:aff></affiliation><affiliation wicri:level="2"><nlm:aff id="af5-cells-08-00116">Biomolecular Sciences Institute, Florida International University, Miami, FL 33199, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biomolecular Sciences Institute, Florida International University, Miami, FL 33199</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Krokidis, Marios G" sort="Krokidis, Marios G" uniqKey="Krokidis M" first="Marios G." last="Krokidis">Marios G. Krokidis</name><affiliation><nlm:aff id="af6-cells-08-00116">Institute of Nanoscience and Nanotechnology, NCSR Demokritos Agia Paraskevi, 15310 Athens, Greece;<email>m.krokidis@inn.demokritos.gr</email></nlm:aff></affiliation></author><author><name sortKey="Chatgilialoglu, Chryssostomos" sort="Chatgilialoglu, Chryssostomos" uniqKey="Chatgilialoglu C" first="Chryssostomos" last="Chatgilialoglu">Chryssostomos Chatgilialoglu</name><affiliation><nlm:aff id="af1-cells-08-00116">Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy;<email>francesco.manoli@isof.cnr.it</email> (F.M.);<email>chrys@isof.cnr.it</email> (C.C.)</nlm:aff></affiliation></author><author><name sortKey="Faraone Mennella, Maria Rosaria" sort="Faraone Mennella, Maria Rosaria" uniqKey="Faraone Mennella M" first="Maria Rosaria" last="Faraone Mennella">Maria Rosaria Faraone Mennella</name><affiliation><nlm:aff id="af2-cells-08-00116">Dipartimento di Biologia, Università di Napoli “Federico II”, 80138 Napoli, Italy;<email>ar.sabbia@studenti.unina.it</email></nlm:aff></affiliation></author></analytic><series><title level="j">Cells</title><idno type="eISSN">2073-4409</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biomimetics</term><term>DNA Damage</term><term>Deoxyadenosines (chemistry)</term><term>Fluorescence</term><term>Humans</term><term>Models, Biological</term><term>Molecular Weight</term><term>Oligonucleotides (metabolism)</term><term>Poly (ADP-Ribose) Polymerase-1 (metabolism)</term><term>Protein Binding</term><term>Stereoisomerism</term><term>Substrate Specificity</term><term>Temperature</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Altération de l'ADN</term><term>Biomimétique</term><term>Désoxyadénosine ()</term><term>Fluorescence</term><term>Humains</term><term>Liaison aux protéines</term><term>Masse moléculaire</term><term>Modèles biologiques</term><term>Oligonucléotides (métabolisme)</term><term>Poly (ADP-Ribose) polymerase-1 (métabolisme)</term><term>Spécificité du substrat</term><term>Stéréoisomérie</term><term>Température</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Deoxyadenosines</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Oligonucleotides</term><term>Poly (ADP-Ribose) Polymerase-1</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Oligonucléotides</term><term>Poly (ADP-Ribose) polymerase-1</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biomimetics</term><term>DNA Damage</term><term>Fluorescence</term><term>Humans</term><term>Models, Biological</term><term>Molecular Weight</term><term>Protein Binding</term><term>Stereoisomerism</term><term>Substrate Specificity</term><term>Temperature</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Altération de l'ADN</term><term>Biomimétique</term><term>Désoxyadénosine</term><term>Fluorescence</term><term>Humains</term><term>Liaison aux protéines</term><term>Masse moléculaire</term><term>Modèles biologiques</term><term>Spécificité du substrat</term><term>Stéréoisomérie</term><term>Température</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>5’,8-Cyclo-2’-deoxyadenosine (cdA), in the 5’<italic>R</italic> and 5’<italic>S</italic>diastereomeric forms, are typical non strand-break oxidative DNA lesions, induced by hydroxyl radicals, with emerging importance as a molecular marker. These lesions are exclusively repaired by the nucleotide excision repair (NER) mechanism with a low efficiency, thus readily accumulating in the genome. Poly(ADP-ribose) polymerase1 (PARP1) acts as an early responder to DNA damage and plays a key role as a nick sensor in the maintenance of the integrity of the genome by recognizing nicked DNA. So far, it was unknown whether the two diastereomeric cdA lesions could induce specific PARP1 binding. Here, we provide the first evidence of PARP1 to selectively recognize the diastereomeric lesions of 5’<italic>S</italic>-cdA and 5’<italic>R</italic>-cdA in vitro as compared to deoxyadenosine in model DNA substrates (23-mers) by using circular dichroism, fluorescence spectroscopy, immunoblotting analysis, and gel mobility shift assay. Several features of the recognition of the damaged and undamaged oligonucleotides by PARP1 were characterized. Remarkably, PARP1 exhibits different affinities in binding to a double strand (ds) oligonucleotide, which incorporates cdA lesions in <italic>R</italic> and <italic>S</italic> diastereomeric form. In particular, PARP1 proved to bind oligonucleotides, including a 5’<italic>S</italic>-cdA, with a higher affinity constant for the 5’<italic>S</italic> lesion in a model of ds DNA than 5’<italic>R</italic>-cdA, showing different recognition patterns, also compared with undamaged dA. This new finding highlights the ability of PARP1 to recognize and differentiate the distorted DNA backbone in a biomimetic system caused by different diastereomeric forms of a cdA lesion.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Chatgilialoglu, C" uniqKey="Chatgilialoglu C">C. Chatgilialoglu</name></author><author><name sortKey="Ferreri, C" uniqKey="Ferreri C">C. Ferreri</name></author><author><name sortKey="Terzidis, M A" uniqKey="Terzidis M">M.A. Terzidis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chatgilialoglu, C" uniqKey="Chatgilialoglu C">C. Chatgilialoglu</name></author><author><name sortKey="Krokidis, M G" uniqKey="Krokidis M">M.G. Krokidis</name></author><author><name sortKey="Papadopoulos, K" uniqKey="Papadopoulos K">K. Papadopoulos</name></author><author><name sortKey="Terzidis, M A" uniqKey="Terzidis M">M.A. Terzidis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yuan, B" uniqKey="Yuan B">B. Yuan</name></author><author><name sortKey="Wang, J" uniqKey="Wang J">J. Wang</name></author><author><name sortKey="Cao, H" uniqKey="Cao H">H. Cao</name></author><author><name sortKey="Sun, R" uniqKey="Sun R">R. Sun</name></author><author><name sortKey="Wang, Y" uniqKey="Wang Y">Y. 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Pascal</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Floride</li></region></list><tree><noCountry><name sortKey="Chatgilialoglu, Chryssostomos" sort="Chatgilialoglu, Chryssostomos" uniqKey="Chatgilialoglu C" first="Chryssostomos" last="Chatgilialoglu">Chryssostomos Chatgilialoglu</name><name sortKey="Faraone Mennella, Maria Rosaria" sort="Faraone Mennella, Maria Rosaria" uniqKey="Faraone Mennella M" first="Maria Rosaria" last="Faraone Mennella">Maria Rosaria Faraone Mennella</name><name sortKey="Ferreri, Carla" sort="Ferreri, Carla" uniqKey="Ferreri C" first="Carla" last="Ferreri">Carla Ferreri</name><name sortKey="Krokidis, Marios G" sort="Krokidis, Marios G" uniqKey="Krokidis M" first="Marios G." last="Krokidis">Marios G. Krokidis</name><name sortKey="Lai, Yanhao" sort="Lai, Yanhao" uniqKey="Lai Y" first="Yanhao" last="Lai">Yanhao Lai</name><name sortKey="Laverde, Eduardo" sort="Laverde, Eduardo" uniqKey="Laverde E" first="Eduardo" last="Laverde">Eduardo Laverde</name><name sortKey="Manoli, Francesco" sort="Manoli, Francesco" uniqKey="Manoli F" first="Francesco" last="Manoli">Francesco Manoli</name><name sortKey="Masi, Annalisa" sort="Masi, Annalisa" uniqKey="Masi A" first="Annalisa" last="Masi">Annalisa Masi</name><name sortKey="Sabbia, Arianna" sort="Sabbia, Arianna" uniqKey="Sabbia A" first="Arianna" last="Sabbia">Arianna Sabbia</name></noCountry><country name="États-Unis"><region name="Floride"><name sortKey="Liu, Yuan" sort="Liu, Yuan" uniqKey="Liu Y" first="Yuan" last="Liu">Yuan Liu</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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